Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDLVRVERKGRVTTVILNRPASRNAVNGPTAAALCAAFEQFDRDDAASVAVLWGAGGTFCAGADLKAFGTPEANSVHRTGPGPMGPSRMMLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDMILTGRGVPADEALAMGLANRVVPKGQARQAAEELAAQLAALPQQCLRSDRLSALHQWGLPESAALDLEFASIARVAGEALEGARRFAAGAGRHGAPAPRAEQGDTL
4QFE Chain:D ((7-236))
-SEPVRIERNGPVTTVIIDRPEARNAVNGPTAAALFAAFEEFDADDTASVAVLTGANGTFCAGADLKAFGTPEANQVHREGPGPMGPSRMDLSKPVIAAISGYAVAGGLELALWCDLRVVDEDATMGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRAVDAAEAYAIGLANRVVPTGQARQAAEELAADLARLPQQCMRADRLSALHQWGESENAAMDFEFASISR--------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4QFE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139461 for 1970 contacts (-70.8/contact) +
2D Compatibility (PS) -25750 + (NN) -15705 + (LL) 1720
1D Compatibility (HY) -25200 + (ID) 9500
Total energy: -213896.0 ( -108.58 by residue)
QMean score : 0.544
(partial model without unconserved sides chains):
PDB file :
Tito_4QFE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QFE-query.scw
PDB file :
Tito_Scwrl_4QFE.pdb
: