Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARQVFDDKLLAVISGNSIGVLATIKHDGRPQLSNVQYHFDPRKLLIQVSIAEPRAKTRNLRRDPRASILVDADDG-------WSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDYRQAMVTDRRVLLTLPISHVYGLPPGMR
1VL7 Chain:A ((23-154))
---------YAGFIQEFQSAIISTISEQGIPNGSYAPFVIDD-AKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAKTNQIFARRRLSFDCTATLIERESQKWNQVVDQFQERFGQ-------IIEVLR--GLADFRIFQLTPKEGRFVIG---
General information:
TITO was launched using:
RESULT:
Template:
1VL7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48707 for 894 contacts (-54.5/contact) +
2D Compatibility (PS) -13875 + (NN) -7157 + (LL) 1616
1D Compatibility (HY) -3600 + (ID) 900
Total energy: -72623.0 ( -81.23 by residue)
QMean score : 0.370
(partial model without unconserved sides chains):
PDB file :
Tito_1VL7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VL7-query.scw
PDB file :
Tito_Scwrl_1VL7.pdb
: