Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MASLLNARTAVITGGAQGLGLAIGQRFVAEGARVVLGDVNLEATEVAAKRLGGDDVA--LAVRCDVTQADDVDILIRTAVERFG-GLDVMVNNAGITRDATMRTMTEEQFDQVIAVHLKGTWNGTRLAA-AIMRERKRGAIVNMSSVSGKVGMVGQTNYSAAKAGIVGMTKAAAKELAHLGIRVNAIAPGLIRSAMTEAMPQRIWDQKLAEVPMGRAGEPSEVASVAVFLASDLSSYMTGTVLDVTGGRFI |
| 2PD6 Chain:D ((3-256)) | --NRLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLL------NHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKVPQKVVDKITEMIPMGHLGDPEDVADVVAFLASEDSGYITGTSVEVTGGLF- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PD6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -129558 for 2109 contacts (-61.4/contact) +
2D Compatibility (PS) -25284 + (NN) -632 + (LL) 396
1D Compatibility (HY) -16400 + (ID) 5150
Total energy: -176628.0 ( -83.75 by residue)
QMean score : 0.551
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