Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------MASDLYLGYRNDDADTPFGKFFKPEM-------APLPQHVVVALQHGPQAGMALLAFDDAASIVDEGYQQTENGYGILGDGSMQVSVRTDMPGVTPAMWAWWFGWHGSDTRRYKLWHPRAHL--------SARWKDGDQDSGAGRRGAQRYVGRWSMIS-EYIGSTKLGAAIQFVEPAAMGLPDDSDDTVSICARLGSADAPVDAGWFVHQVRSTPGGSEMRSRFWMGGPHIAVRKAPEVASKAVRPIASKLIGVSESTARNLLVYCAQEMNHLAGFLADLWESFGDE---------------- |
| 4J37 Chain:A ((9-327)) | PPKRKIVLLMAYSGKGYHGMQRNQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTG----------GFNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSACRYILEMYCEEPFVREGLEFAVIRVKGQ------SFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTEKVDVPKAPGLGLVLERVHFEPLDWAQEEGKVAAFKEEHIYPTIIGTERDERSMAQWLSTLPIHNF |
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General information:
TITO was launched using:
| RESULT:
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Template: 4J37.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -23076 for 1892 contacts (-12.2/contact) +
2D Compatibility (PS) -26070 + (NN) 4820 + (LL) 1388
1D Compatibility (HY) -400 + (ID) 1200
Total energy: -44538.0 ( -23.54 by residue)
QMean score : 0.082
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