Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLHDRLTGAPRGATGDEGAANAHITRAMVAALTSVATQIKTLDAQIAEQLSLH--------ADAHIFTSLPRSGTVRAARLLAEIGDCRARFPTPESLACLAGVAPSTRQSGKVKHVGFRWAADKQLRDAVCDFAGDSRRANLWAADRYNRAIARGHDHPHAVRILARAWLYAIWHC--WQDGAAYHPANHRALQALLNQDQDRAA
1BJ5 Chain:? ((198-389))
-----LKCASLQKFGERAFKAWAVARLSQRFPKAEFAEVSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDS--ISSKLKECCEK-PLLEKSHCIAEVENDEMPADLPSL-----AADFVESKDVCKNYAEA-KDVFLGMFLYEYARRHPDYSVVLLLRLAKTYETTLEKCCAAADPHECYAKVFDEFKPLVEEPQNLIK
General information:
TITO was launched using:
RESULT:
Template:
1BJ5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21310 for 1300 contacts (-16.4/contact) +
2D Compatibility (PS) -19381 + (NN) -8549 + (LL) 1336
1D Compatibility (HY) -1600 + (ID) 1300
Total energy: -50804.0 ( -39.08 by residue)
QMean score : 0.370
(partial model without unconserved sides chains):
PDB file :
Tito_1BJ5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BJ5-query.scw
PDB file :
Tito_Scwrl_1BJ5.pdb
: