Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAAGVRSTRQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTDTGES-VYRRCSEHHHHHLVCRSCGSTIEVGDHEVEAWAAEVATKHGFSDVSHTIEIFGTCSDCRS
4LMY Chain:A ((20-149))
LREKHIRITETRKAIISYMIQSTEHPSADKIYRDLQPNFPNMSLATVYNNLKVLVDEGFVSELKISNDLTTYYDFMGH-QHVNVVCEICGKIADFMDVDVMDIAKEAHEQTGYKVTRIPVIAYGICPDCQA
General information:
TITO was launched using:
RESULT:
Template:
4LMY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43821 for 772 contacts (-56.8/contact) +
2D Compatibility (PS) -14412 + (NN) -8468 + (LL) 44
1D Compatibility (HY) -10000 + (ID) 1600
Total energy: -78257.0 ( -101.37 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_4LMY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LMY-query.scw
PDB file :
Tito_Scwrl_4LMY.pdb
: