Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLSLTLSEASCIASASRWRHIIPAGVVCALIAGIGVGCHGGPSDVVGRAGPDRAHTSITLVAYAVP-EPGWSAVIPAFNA----SEQGRGVQVITSYGA--SADQSRGVADGKPADLVNFSVEPDIARLVKAGKVDK--DW-------DAD-------------ATKGIPFG--SVVTFVVRAGNPK-----NIRDWDDLLRPGIEVITPS--PLSSG-S-----AKWN--LLAPYAA-KSD----GG-------RNNQAGIDFVNTLVNEHVKLRP----GS--GREATDVFVQGSGDVLISYENEAIATER-----AGKPVQHV-TPP--QT---F--K---IENPLAVVATSTHLGAATAFRNFQYTVQAQKLWAQAGFRPVDPAVAADFADLFPVPAKLWTIADLGGWGSVDPQLFDKATGSITKIYLRATG |
| 3VXB Chain:A ((38-369)) | --------------------------------------------------------TITAMVYGDDAVKVQDKAASRFNASAEAKKANAKVKMERIPASDYPAKLRTAMGSPNAPDIFFNWGGGSIKAYKEAGQLVDLTDVIKSDEVLSTGFLPSVVAAGSLDGHEYGIPMRGMQPVLLFYNKSVFAEHKLTPPTTWDQLLDNVAKLKKAGVTPFALGGVEIWPELMWLEYLVDRIGGPQVFDKIRNGDASGWGDPAVLKAAQTVKQL-VDEGAFGKGFSSVSYNNGGAPALLAKGKAGMHLMGSWEYSTQLGKFPDFAKKDLGWCAFPSFEGGAGDIRNVVGNPCNYWSVNARTGNKDGAIAFLRDCASEAYTKDLIDNGDVPTTTIA----------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VXB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -63078 for 1788 contacts (-35.3/contact) +
2D Compatibility (PS) -27358 + (NN) -13385 + (LL) 5772
1D Compatibility (HY) -4400 + (ID) 2200
Total energy: -104649.0 ( -58.53 by residue)
QMean score : 0.405
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