Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREIALWFPGA
3Q8Y Chain:F ((2-131))
--ERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSE-ASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWF---
General information:
TITO was launched using:
RESULT:
Template:
3Q8Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84315 for 1008 contacts (-83.6/contact) +
2D Compatibility (PS) -14068 + (NN) -5090 + (LL) 236
1D Compatibility (HY) -13200 + (ID) 3650
Total energy: -120087.0 ( -119.13 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_3Q8Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q8Y-query.scw
PDB file :
Tito_Scwrl_3Q8Y.pdb
: