Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGIVGVGIDLVSIPDFAEQVDQ----PGTVFAET---FTPGERRDASDKSSSAARHLAARWAAKEAVIKAWSGSRFAQRPVLPEDIH-RDIEVVTDMWGRPRVRLTGAIAEYLADVTI---HVSLTHEGDTAAAVAILEAP
2JCA Chain:B ((21-143))
MSIIGVGIDVAEVERFGAALERTPALAGRLFLESELLLPGGERRGVAS--------LAARFAAKEALAKALGA---------PAGLLWTDAEVWVEAGGRPRLRVTGTVAARAAELGVASWHVSLSHDAGIASAVVIAEG-
General information:
TITO was launched using:
RESULT:
Template:
2JCA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64550 for 805 contacts (-80.2/contact) +
2D Compatibility (PS) -12289 + (NN) -4651 + (LL) 1068
1D Compatibility (HY) -8000 + (ID) 2450
Total energy: -90872.0 ( -112.88 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_2JCA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JCA-query.scw
PDB file :
Tito_Scwrl_2JCA.pdb
: