Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVLDSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTCHHVEAAYADVSVDMGKANRLGAG------------EAVV-GGRRFHGLAVDVGNPHLACVDSQLTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTVTD-ATSFLRGPSVLVARGDLADDWWNAMG |
5HA4 Chain:A ((5-281)) | LEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDV--------------PEADFKYRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQN----GWVRVNMGYPKFLPNEIPFVAEEPEALYTLELANDQNISIDVVNMGNPHAVTIVPDVLTADV---AGIGPQVESHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRGLLA-NSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLRYF---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 5HA4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -156061 for 2239 contacts (-69.7/contact) +
2D Compatibility (PS) -28967 + (NN) -11861 + (LL) 1952
1D Compatibility (HY) -14800 + (ID) 3850
Total energy: -213587.0 ( -95.39 by residue)
QMean score : 0.412
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