Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAETAPLRVQLIAKTDFLAPPDVPWTTDADGGPALVEFAGRACYQSWSKPNPKTATNAGYLRHIIDVGHFSVLEHASVSFYITGISRSCTHELIRHRHFSYSQLSQRYVPEKDSRVVVPPGMEDDADLRHILTEAADAARATYSELLAKLEAKFADQPNAILRRKQARQAARAVLPNATETRIVVTGNYRAWRHFIAMRASEHADVEIRRLAIECLRQLAAVAPAVFADFEVTTLADGTEVATSPLATEA
3FNN Chain:A ((9-246))
--EQVKLSVELIACSSFTPPADVEWSTDVEGAEALVEFAGRACYETFDKPNPRTASNAAYLRHIMEVGHTALLEHANATMYIRGISRSATHELVRHRHFSFSQLSQ-------SEVVVPTLIDEDPQLRELFMHAMDESRFAFNELLNALEEK---------RKKQARQAARAVLPNATESRIVVSGNFRTWRHFIGMRASEHADVEIREVAVECLRKLQVAAPTVFGDFEIETLADGSQ----------
General information:
TITO was launched using:
RESULT:
Template:
3FNN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127343 for 1640 contacts (-77.6/contact) +
2D Compatibility (PS) -24222 + (NN) -10972 + (LL) 2152
1D Compatibility (HY) -22800 + (ID) 7150
Total energy: -190335.0 ( -116.06 by residue)
QMean score : 0.611
(partial model without unconserved sides chains):
PDB file :
Tito_3FNN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FNN-query.scw
PDB file :
Tito_Scwrl_3FNN.pdb
: