Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPALVVGPAAWHAVHVTQSSSAITPGQTAELYPGDIKSVLLTAEQIQARIAELGEQIGNDYRELSATTGQDLLLITVLKGAVLFVTDLARAIPVPTQFEFMAVSSYGSSTSSSGVVRILKDLDRDIHGRDVLIVEDVVDSGLTLSWLSRNLTSRNPRSLRVCTLLRKPDAVHANVEIAYVGFDIPNDFVVGYGLDYDERYRDLSYIGTLDPRVYQ
4RHU Chain:B ((15-201))
-----------------------------AELYPGDIKSVLLTAEQIQARIAELGEQIGNDYRELSATTGQDLLLITVLKGAVLFVTDLARAIPVPTQFEFMAVSSYG-------VVRILKDLDRDIHGRDVLIVEDVVDSGLTLSWLSRNLTSRNPRSLRVCTLLRKPDAV--NVEIAYVGFDIPNDFVVGYGLDYDERYRDLSYIGTLDPRVYQ
General information:
TITO was launched using:
RESULT:
Template:
4RHU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153491 for 1355 contacts (-113.3/contact) +
2D Compatibility (PS) -19271 + (NN) -9254 + (LL) 1848
1D Compatibility (HY) -28800 + (ID) 8900
Total energy: -217868.0 ( -160.79 by residue)
QMean score : 0.638
(partial model without unconserved sides chains):
PDB file :
Tito_4RHU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RHU-query.scw
PDB file :
Tito_Scwrl_4RHU.pdb
: