Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------------MKATYSMLSQVTFPLAE-----AGYYVVPVALADETF-------RQNGLTSAGDVHQV--------SPAKLREIYGADAALYVTVSDYGTRYMVISSATIVTASAKLVDLRSGTTLWTGSATASSEEGNGGNNGGLVGMLITAAVKQIINSSVEDAGYPIAGMTSARLLSAGQPGGLL--YGPRSPRYGSD
1AER Chain:A ((1-211))
AFLGDGGDVSFSTRGTQNWTVERLLQAHRQLEERGYVFVGYHGTFLEAAQSIVFGGVRAAIWRGFYIAGDPALAYGYAQDQEPDARGRIRNGALLRVYVPRSSLPGFYRTSLTLAAPEAAGEVERLIGHPLPLRLDAITGPEE-EGGRLETILGWPLAERTVVIPSAIPTDPRNVGGDLDPSSIPDKEQAISALPDYASQPGKPPR-
General information:
TITO was launched using:
RESULT:
Template:
1AER.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36159 for 1168 contacts (-31.0/contact) +
2D Compatibility (PS) -17727 + (NN) -3120 + (LL) -248
1D Compatibility (HY) 2400 + (ID) 1650
Total energy: -56504.0 ( -48.38 by residue)
QMean score : 0.088
(partial model without unconserved sides chains):
PDB file :
Tito_1AER.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AER-query.scw
PDB file :
Tito_Scwrl_1AER.pdb
: