Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MATVI-DRHSQPTWRDFLELTKPKVVVLMLITSLIGMLLATKAPLDGFVPW---QVLIFGNLGIGL-CAGAAAAVNHV------VD-RRIDSIMARTHKRPLA--------EGRVSPSM-------ALGFALL-LALAGMAVLLAFTNPLTAWLTLASLLGYAALYTGFLKRATPQNIVIGG---LAGAAPPLLGWV-AITGHLSAEPLLL-V-LIIFAWTPPH-FWALCIHR--------KDEYAKADIPMLPVTHGERYTKLHILLYTLV-LFAVSLM----PFVIHM-SGLVYLLCALAL-----GARFLDWAWAL-YCDSR------------------PHAAIK----TFKYSIVY-LFLLF-MALLV------------DHYLPLKLLL---------------------------------------- |
| 4QT9 Chain:A ((19-432)) | LSDDALMDTVQRRTFLYFWEGAEPN-----------SGLAPERYHVDGVYPQNDANVVTSGGSGFGIMAILAGIDRGYVTREEGLARMERIVSFLEKADRFHGAYPHWWYGDTGKVKPFGQKDNGGDLVETAFLMQGLLAVHQYYANGN--------DKEKAIAQRIDRLWREVDWDWYRKGGQNVLYWHWSPTYGWEMDFPIHGYNE---CMIMYILAAASPTHGVPAAVYHDGWAQNGAIVSPHKVEGIELHLRYQGTEAGPLFWAQYSFLGLDPVGLKDEYCPSYFHEMRNLTLVNRAYCIRNPKHYKGFGPDCWGLTASYSVDGYAAHSPNEQDDKGVISPTAALSSIVYTPEYSLQVMRHLYNMGDKVFGPFGFYDAFSETDNWYPQRYLAIDQGPIAVMIENYRTGLLWKLFMSHPDVQAGLTKLGFNTN |
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General information:
TITO was launched using:
| RESULT:
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Template: 4QT9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -245202 for 1946 contacts (-126.0/contact) +
2D Compatibility (PS) -28423 + (NN) -8664 + (LL) 2748
1D Compatibility (HY) -6800 + (ID) 3350
Total energy: -289691.0 ( -148.86 by residue)
QMean score : 0.207
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