Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAYAEWIAVKVVVSKSIGTVGIRNATLQWGKFYRYTNKDDEISTEEVSSMNVQAGSPQWIASCGRENASSGTQGSFDCYD---GNTKMGTFSWDDPWKSGATNTWSFTPASADY-AGITSGGNATGTDIGEVTLTLGRFS
4OEB Chain:A ((2-136))
-AYAQWVIIIIHNVGS-KDVKIKNLKPSWGKLHADGDKDTEVSASKYEGTVIKPDEKLQINACGRSDAAEGTTGTFDLVDPADGDKQVRHFYWDCPWGSK-TNTWTVSGSNTKWMI-EYSGQNLDSGALGTITVDTLKK-
General information:
TITO was launched using:
RESULT:
Template:
4OEB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33737 for 997 contacts (-33.8/contact) +
2D Compatibility (PS) -14059 + (NN) -7325 + (LL) 356
1D Compatibility (HY) -6800 + (ID) 2100
Total energy: -63665.0 ( -63.86 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_4OEB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OEB-query.scw
PDB file :
Tito_Scwrl_4OEB.pdb
: