Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTAIYLAGPDVFRPDAEAHGETLKALCAEFG--F--VGLYPLDHALP-A------DIREPAAQAAWIYRANVGLIERADCVLANLEPFRGSEPDSGTAFEVGYALALGKPVYAYLSDAGAYAERLARLAPEWLGEHPGEDRDGWQLEGFGLPLNLMLAVPSRLVAGGPREALRRLAEELGGNA
1F8Y Chain:A ((3-142))
KKTIYFGAGW-FTDRQNKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIMLGVYI---PDEEDVGLGMELGYALSQGKYVLLVIPDED-----------------------------YGKPINLMSWG-VSDNVIKMSQLKDFNFNKPRFDF
General information:
TITO was launched using:
RESULT:
Template:
1F8Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50425 for 941 contacts (-53.6/contact) +
2D Compatibility (PS) -13991 + (NN) -8477 + (LL) 1692
1D Compatibility (HY) -5200 + (ID) 1450
Total energy: -77851.0 ( -82.73 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_1F8Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F8Y-query.scw
PDB file :
Tito_Scwrl_1F8Y.pdb
: