Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAFSTQDSDEVLSEINVTPLVDVMLVLLVVFIVTAPLLTNSIPINLPKTESVAPPEQKDPLVVSIDGAGKLFVNKDEIQPELLESNLAAAKAKDAEVRVQLQADEGVNYGQVAKAMASIERAGITRLAVITAR-----
2PFU Chain:A ((43-141))
---------------------------------------MDVKVNLPASTSTPQPRPEKPVYLSVKADNSMFIGNDPVTDETMITALNALTEGKKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLVGEETAKAK
General information:
TITO was launched using:
RESULT:
Template:
2PFU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23191 for 492 contacts (-47.1/contact) +
2D Compatibility (PS) -9790 + (NN) 3001 + (LL) 4008
1D Compatibility (HY) -8400 + (ID) 1000
Total energy: -35372.0 ( -71.89 by residue)
QMean score : 0.674
(partial model without unconserved sides chains):
PDB file :
Tito_2PFU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PFU-query.scw
PDB file :
Tito_Scwrl_2PFU.pdb
: