Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLWPATLIGAGAGWALASIPGALLGGLLGQLLDRRLRLESWRGLLARLRGRAVNDEDDLLFQLLGYLAKSGGRVEEMHIRQAREEMALRKLDRRAQRRAIASFGKGKAGIAHLQAEVARLKGERAEAVLLACWRMAWAGGVLSQSARQLVLQWGRWLGWSAERTERLSARVMPKRTRAVARDSYREALLLLGVEAGSEPALIKRAYRKLISQHHPDKLAGAGASVERVRAATEKTRELQAAYALVREREGFR |
1HDJ Chain:A ((2-59)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP--------GAEEKFKEIAEAYDVLSDPRKRE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1HDJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -16482 for 355 contacts (-46.4/contact) +
2D Compatibility (PS) -6242 + (NN) -3022 + (LL) 15976
1D Compatibility (HY) -1200 + (ID) 950
Total energy: -11920.0 ( -33.58 by residue)
QMean score : 0.736
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