Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDNDDRIKLEASWKEALREEFDKPYMKQLGEFLRQEKAAGKVIFPPGPLIFNALNTTPLENVKVVIIGQDPYHGPGQAHGLCFSVQPGVPTPPSLQNIYKELNRDL-NIPIPNNGYLQRWAEQGVLLLNTSLTVEQAKAGSHANAGWQPFTDRVIEVVNERCERLVFLLWGSHAQSKQKLIDPQRHLILKSAHPSPLSAYRGFLGNGHFSRTNKFLEQNGKTPIDWSLPDL
1EMJ Chain:A ((7-220))
------------SWKKHLSGEFGKPYFIKLMGFVAEERKH-YTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL--
General information:
TITO was launched using:
RESULT:
Template:
1EMJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97995 for 1750 contacts (-56.0/contact) +
2D Compatibility (PS) -23099 + (NN) -11906 + (LL) 720
1D Compatibility (HY) -21600 + (ID) 5800
Total energy: -159680.0 ( -91.25 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_1EMJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EMJ-query.scw
PDB file :
Tito_Scwrl_1EMJ.pdb
: