Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIREILKMGDERLLRIAQPVPSELFGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQLVIFGFERSERYPDAPAVPPTILLNPRVTPLDDEMEEGWEGCLSVPGLRGAVSRHRRIRYQGLDPQDSRSTAASKGSMRGWCSTSATT
1SZZ Chain:C ((2-135))
-VRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFTTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDH
General information:
TITO was launched using:
RESULT:
Template:
1SZZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49284 for 852 contacts (-57.8/contact) +
2D Compatibility (PS) -14216 + (NN) -5264 + (LL) 208
1D Compatibility (HY) -12800 + (ID) 3250
Total energy: -84606.0 ( -99.30 by residue)
QMean score : 0.600
(partial model without unconserved sides chains):
PDB file :
Tito_1SZZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SZZ-query.scw
PDB file :
Tito_Scwrl_1SZZ.pdb
: