Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTCAYRREIHHAHVAIRDWLAGDSRADALDALMARFAEDFSMVTPHGVVLDKTALGELFRSKGGTRPGLRIEIDGESLLASGVDGATLAYREIQSDAAG-RSERLSTVVLHRDDEGRLYWRHLQETFCG
2IMJ Chain:A ((18-124))
----------SAIEKIRLAEDGWNS-RDPERVSLAYTLDTQWRNRAEFAHNREEAKAFLTRKWAKELDYRLIKELWA---FTDNRIAVRYAYEWHDDSGNWFRSYGNENWEFDEQGLMARRFACINDMP
General information:
TITO was launched using:
RESULT:
Template:
2IMJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19438 for 718 contacts (-27.1/contact) +
2D Compatibility (PS) -11247 + (NN) -5181 + (LL) 1744
1D Compatibility (HY) 1200 + (ID) 650
Total energy: -33572.0 ( -46.76 by residue)
QMean score : 0.209
(partial model without unconserved sides chains):
PDB file :
Tito_2IMJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IMJ-query.scw
PDB file :
Tito_Scwrl_2IMJ.pdb
: