Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDITQAAIVTGASRGIGRAIARRLAADGFAVAVNYASNQAMADEVVAEIVAAGGAAIAVQGDVASAEDMDKLFEATRGAFGRIDVVVNSAGTMPYLKIADGDLEGFDRVIRTNLRGAFIVLGLAARHVERGGRIIALSTSVIAR--ALPSYGPYIASKSGVEGLVHVLANELRGQDIRVNAVAPGPVATELFF--------NGKS--AEQIDQI-ARLAPLERLGEPDEIAAAVSFLAGPDGAWVNSQVLRVNGGFA
4FJ1 Chain:C ((19-270))
-----KVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIV-LTSSNTSKDFSVPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHASPLHRNGWPQDVANVVGFLVSKEGEWVNGKVLTLDGGAA
General information:
TITO was launched using:
RESULT:
Template:
4FJ1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -159238 for 2074 contacts (-76.8/contact) +
2D Compatibility (PS) -26115 + (NN) -9364 + (LL) 392
1D Compatibility (HY) -15600 + (ID) 4900
Total energy: -214825.0 ( -103.58 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_4FJ1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FJ1-query.scw
PDB file :
Tito_Scwrl_4FJ1.pdb
: