Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLAGSFAALFLSLSAQAADCTFTQLEIVPQFGSPNMFGGEDEHVRVMFSNEDPND---DNPDAFPEPPVYLADRDSGNDCRIEDGGIWSRGGVFLSQDGRRVLMHEFSGSSAELVSY-DSATCKVVHR--EDISGQRWAVDKDGLRLGQKCSGESVDSCAKIVKRSLAPFCQTAKK
1WCK Chain:A ((80-215))
---GLGLPAGLYAFNSGG--------ISLDLGINDPVPFNTVGSQFGTAISQLDADTFVISETGFYKITVIANTATAS------------VLGGLTIQVNGVPV-----PGTGSSLISLGAPIVIQAITQITTTPSLVEVIVTGLGLSL-------ALGTSASIIIEKVAH-------
General information:
TITO was launched using:
RESULT:
Template:
1WCK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17667 for 943 contacts (-18.7/contact) +
2D Compatibility (PS) -13373 + (NN) 809 + (LL) 2416
1D Compatibility (HY) -4800 + (ID) 1200
Total energy: -33815.0 ( -35.86 by residue)
QMean score : 0.220
(partial model without unconserved sides chains):
PDB file :
Tito_1WCK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WCK-query.scw
PDB file :
Tito_Scwrl_1WCK.pdb
: