Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNAKEILVHSLRLLENGDARGWCDLFHPEGVLEFPYAPPGWKTRFEGRETIWAHMRLFPEHLTVR-FTDVQFYETADPDLAIGEFHGDGVATVSGGKLAQDYISVLRTRDGQILLYRDFWNPLRHLEALGGVEAAAKIVQGA
1S5A Chain:D ((29-139))
-------------------KSWTELWDENAVFEFPYAPEGSPKRIEGKAAIYDYIKDYPKQIHLSSFTAPTVYRSADSNTVIAEFQCDGHVIETGLPYRQSYISVIETRDGRIVRYRDYWNPLVVKEAFG------------
General information:
TITO was launched using:
RESULT:
Template:
1S5A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35938 for 694 contacts (-51.8/contact) +
2D Compatibility (PS) -11290 + (NN) -4280 + (LL) 2684
1D Compatibility (HY) -8800 + (ID) 2300
Total energy: -59924.0 ( -86.35 by residue)
QMean score : 0.335
(partial model without unconserved sides chains):
PDB file :
Tito_1S5A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S5A-query.scw
PDB file :
Tito_Scwrl_1S5A.pdb
: