Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDRLQIEDLLLGDGKEVVKGALITTQYKGTLEDGTLFDSSYERGRPFQCVIGTGRVIKGWDQGLMGMKVGGKRRLFVPSHLAYGERQVGAHIKPHSNLLFEIELLEVLTRDD
2PBC Chain:B ((8-99))
-------------------KGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAPPKIPGGATLVFEVELLKIERR--
General information:
TITO was launched using:
RESULT:
Template:
2PBC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47597 for 628 contacts (-75.8/contact) +
2D Compatibility (PS) -9632 + (NN) 1528 + (LL) 1188
1D Compatibility (HY) -9200 + (ID) 2400
Total energy: -66113.0 ( -105.28 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_2PBC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PBC-query.scw
PDB file :
Tito_Scwrl_2PBC.pdb
: