Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNGVSRLLSLALLGAALHWAPAQAEEQPRLFELLGQPGYKATWHAMFKGESDVPKWVSDASGPSSPSTSLSLEGQPYVLANSCKPHDCGNNRLLVAFRGDKSAAYGLQVSLPDEPAEVMQTPSKYATYRWYGEPSRQ-------VRELLMKQLESDPNWK--
1GPQ Chain:A ((2-128))
-------------------------DDLTISSLAKGETTKAAFNQMVQGHK-LPAWVMK-GGTYTPAQTVTLGDETYQVMSACKPHDCGSQRIAVMWSEKSNQMTGLFSTIDEKT--------SQEKLTWLNVNDALSIDGKTVLFAALTGSLENHPDGFNF
General information:
TITO was launched using:
RESULT:
Template:
1GPQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37399 for 857 contacts (-43.6/contact) +
2D Compatibility (PS) -13257 + (NN) -14936 + (LL) 2944
1D Compatibility (HY) -5600 + (ID) 1400
Total energy: -69648.0 ( -81.27 by residue)
QMean score : 0.388
(partial model without unconserved sides chains):
PDB file :
Tito_1GPQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GPQ-query.scw
PDB file :
Tito_Scwrl_1GPQ.pdb
: