Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRLEQILTPGRSLVNVPGGSKKRVLEQIANLVARELPEFDAQTIFENLVAREKLGSTGFG---NGIAIPHCRLSGCQSPISAVLHLDAPVDFDALDG----APVDLLFVLLVPEAATEEHLELLRQIAAMLDRADVRDRLRSAPTAEALYQIVVDVQNGQ
3T43 Chain:A ((3-135))
--------------------SQNDIIKALASPLIND--GMVVSDFADHVITREQNAPTGLPVEPVGVAIPHTDSKYVRQNAISVGILAEPVNFEDAGGEPDPVPVRVVFMLALGN--WFDITNVLWWIMDVIQDADFMQQLLVMNDD-EIYQSIYTRI---
General information:
TITO was launched using:
RESULT:
Template:
3T43.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96421 for 918 contacts (-105.0/contact) +
2D Compatibility (PS) -14440 + (NN) -10169 + (LL) 1396
1D Compatibility (HY) -8800 + (ID) 1400
Total energy: -129834.0 ( -141.43 by residue)
QMean score : 0.622
(partial model without unconserved sides chains):
PDB file :
Tito_3T43.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3T43-query.scw
PDB file :
Tito_Scwrl_3T43.pdb
: