Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDTGRRILLNCDMGESFGAWRMGDDVHSMPLVDQANLACGFHAGDPLTMRRAVELAVRHGVSIGAHPAYPDLSGFGRRSLACSAEEVHAMVLYQIGALDAFCRSLGTQVAYVKPHGALYNDLVGDDELLRAVLDACAAYRKGLPLMVLALADNGRELELADEADVPLLFEAFADRAYLPDGRLAPRRLGGAVHHDPQRIIEQALAIARGEAFPDYDGNPLRLTADSLCVHGDNPQSLAVLRRLRAALDSL
2DFA Chain:A ((2-242))
------KVDLNADAGESYGAFAYGHDREIFPLVSSANLACGFHGGSPGRILEAVRLAKAHGVAVGAHPGFPDLVGFGRREMALSPEEVYADVLYQIGALSAFLKAEGLPLHHVKPHGALYLKACRDRETARAIALAVKAFDPGLPLVVLPGT---VYEEEARKAGLRVVLEAFPERAYLRSGQLAPRSMPGSWITDPEEAARRALRMVLEGKVEALDGGEVAVRADTLCIH---PNAPEVARAVREALEQ-
General information:
TITO was launched using:
RESULT:
Template:
2DFA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -187261 for 2090 contacts (-89.6/contact) +
2D Compatibility (PS) -26526 + (NN) -14614 + (LL) -448
1D Compatibility (HY) -17600 + (ID) 5600
Total energy: -252049.0 ( -120.60 by residue)
QMean score : 0.546
(partial model without unconserved sides chains):
PDB file :
Tito_2DFA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DFA-query.scw
PDB file :
Tito_Scwrl_2DFA.pdb
: