Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATAPRPLREQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERGGL-D-I---QGGEVIG-LVVSSSCDYFAPVAFPQRIEMGLRVARLGNSSVQYELALFLEGQREACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSSAQ
2OAF Chain:A ((10-150))
------QPRPDSAFVHDVRVTWGDCDPAKIAYTGHLPRFALEAIDAWWSE-YHGPGGWYHLELDTNVGTPFVRLEMDFKSPVTPRHILKCHTWPTRLGTKSITFRVDGVQ--DGVTCFVGAFTCVFTIADQFKSQPAPDHLRALIEPHIP---
General information:
TITO was launched using:
RESULT:
Template:
2OAF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98816 for 996 contacts (-99.2/contact) +
2D Compatibility (PS) -14408 + (NN) -3248 + (LL) 776
1D Compatibility (HY) -1600 + (ID) 1200
Total energy: -118496.0 ( -118.97 by residue)
QMean score : 0.318
(partial model without unconserved sides chains):
PDB file :
Tito_2OAF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OAF-query.scw
PDB file :
Tito_Scwrl_2OAF.pdb
: