Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKWQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVGKIDFEMIEIA
1YK5 Chain:C ((2-53))
-AKWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE--
General information:
TITO was launched using:
RESULT:
Template:
1YK5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15738 for 314 contacts (-50.1/contact) +
2D Compatibility (PS) -5408 + (NN) -3477 + (LL) 556
1D Compatibility (HY) -4000 + (ID) 1500
Total energy: -29567.0 ( -94.16 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_1YK5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YK5-query.scw
PDB file :
Tito_Scwrl_1YK5.pdb
: