Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSTP--VVLITGAAGGLGRAIAKRFAQSHWRIAATDVDKEGLHALNAQVPLDASGVADLRSADNCHTLMSK-----ILARTGRLDALVNAAGVWREGP---------VENFTEEDFDLVLGVNLKASFYMCQAAIPYL-KENQGSIVNISSDSGRQAYRGSAAYCASKAALTMLSKTLALELAEQGVRVNAVSPADIATPMLDYQAERYGMGNPDGYKRALLKDYPQGKAARFIRPEEVAELVWYLCGPQAEAITGADLAVDFGLSAGR |
4NBW Chain:B ((5-256)) | ----KRVAIITGAANGIGRATALEFAQAGYHVVAWDLAEEAGAALIAEIA-DAGGSADFARVDVSAAESVEAAVAEIIAEHGRVDVLVNNAGILHDGQLVKVKGGEVVKKMAEAQFDAVISVNLKGVFLCTQAVAPHMIAAKYGRILNASSVVGLYGNFGQTNYVAAKSGVIGMTKVWARELGRYGITVNAIAPGFIATEMVQQMPER--------VLEAMVARTPVG---RIGDPVDIARAYLFLASEESGFISGTTLSVDGGMVVG- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NBW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -127635 for 1998 contacts (-63.9/contact) +
2D Compatibility (PS) -25553 + (NN) -12386 + (LL) 208
1D Compatibility (HY) -14000 + (ID) 4450
Total energy: -183816.0 ( -92.00 by residue)
QMean score : 0.513
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