Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTPNSTGEVPSPIPKGALGLSLALASLIITANLLLALGIAWDRRLRSPPAGCFFLSLLLAGLLTGLA-LPTLPG--LWNQSRRGYWSCLLVYLAPNFSFLSLLANLLLVHGERYMAVLRPLQPPG---SIRLALLLTWAGPLLFASLPALGWNHW--TPGANCSSQAIF-------PAPYLYLEVYGLLLPAVGAAAFLSVRVLATAHRQLQDICRLERAVCRDEPSALARALTWRQARAQAGAMLLFGLCWGPYVATLLLSVLAYEQR-PPLGPGTLLSLLSLGSASAAAVPVAMGLGDQRYTAPWRAAAQRCLQGLWGRASRDSPGPSIAYHPSSQSSVDLDLN |
| 2KS9 Chain:A ((35-325)) | ----------------WAAAYTVIVVTSVVGNVVVMWIILAHKRMRT-VTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPRLSATATKVVICVIWVLALLLAFPQGYYSTTETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLL-VIGYAYTVVGITLWASEIPGDSSD-------RYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRF----RLGFKHAFRCCPFISAGDYEGLEMKSTRYLQTQGSVYKV |
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General information:
TITO was launched using:
| RESULT:
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Template: 2KS9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -176610 for 2079 contacts (-84.9/contact) +
2D Compatibility (PS) -29202 + (NN) -21947 + (LL) 356
1D Compatibility (HY) -12800 + (ID) 2100
Total energy: -242303.0 ( -116.55 by residue)
QMean score : 0.342
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