Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGDNITSITEFLLLGFPVGPRIQMLLFGLFSLFYVFTLLGNGTILGLISLDSRLHAPMYFFLSHLAVVDIAYACNTVPRMLVNLLHPAKPISFAGRMMQTFLFSTFAVTECLLLVVMSYDLYVAICHPLRYLAIMTWRVCITLAVTSWTTGVLLSLIHLVLLLPLPFCRPQKIYHFFCEILAVLKLACADTHINENMVLAGAISGLVGPLSTIVVSYMCILCAILQIQSREVQRKAFCTCFSHLCVIGLFYGTAIIMYVGPRY------G-N-----PKEQKKYLLLFHSLFNPMLNPLICSLRNSEVKNTLKRVLGVERAL |
| 2LNL Chain:A ((38-323)) | ---------------------NKYVVIIAYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFAL-TLPIWAASK-VNGWIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLT-QKRHLVKFVCLGCWGLSMNLSLPFFLFRQA--Y-H-PNNSSPVCYEVLGND----TAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFKAHM-GQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQNFRHGFLKILAMHG-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2LNL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -193876 for 2000 contacts (-96.9/contact) +
2D Compatibility (PS) -26239 + (NN) 3982 + (LL) 2044
1D Compatibility (HY) -23600 + (ID) 2150
Total energy: -239839.0 ( -119.92 by residue)
QMean score : 0.261
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