Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MADKVQTTLLFLAVGEF--------SVGILGNAFIGLVNC-MDWVKKRKIASIDL----ILTSLAISRICLLCVILLDCFILVLYPDVYATGKEMRIIDFFWTLTNHLSIWFATCLSIYYFFKIGNFFHPLFLWMKWRIDRVISWILLGCVVLSVFISLPATENLNADFRFCVKAK---RKTNLT--WSCRVNKTQHASTKLFLNLATLLPFCVCLMSFFLLILSLRRHIRRMQLSATGCRDPSTEAHVRALKAVISFLL---LFIAYY-----LSFLIATSSYFMPETELAVIFGESIALIYPSSHSFILILGNNKLRH------ASLKVIWKVMSILKGRKFQQHKQI---- |
| 4LDV Chain:A ((16-356)) | -SDALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKILCKVINIQRRAETDEVYAQITLLPELDQSEPTSPDAPVQETVHSFCKTLT---ASDTSTHGGFSV----------LRRHADDCLP--PLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRG---------ENEELRVGVRRHMPSSVIS-------SHSMHIGVLATAAHAITTGTIFSVFYKPRTSRSEFIVSVNRYLEAKTQKLSVGMRFKMRFKRFSGTIVGVQENKSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWELEPLN |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -221687 for 1919 contacts (-115.5/contact) +
2D Compatibility (PS) -29319 + (NN) 13505 + (LL) 2612
1D Compatibility (HY) -3200 + (ID) 2600
Total energy: -240689.0 ( -125.42 by residue)
QMean score : 0.074
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