Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLNLFNNNQVDYSRQNYIILDENKHIYNAVINDLSWKYLFLFGPKGSGKTHLAHIWQSINN------AIFINVNNFI-----------S------------------EIRYSNAFILEDVQDIQ--DEATLLHCYNYMKENNKRLLITSSTSPKRLNFKLKDLSSRILSTISAKIPSASEELLRIMLIKRFSDKQLKVDLKVINYILARIERSFCSINRIIEKIDNGSM----GSNVTIPFVSTLLKRDTT
1SXJ Chain:D ((59-262))
-------------------------------------PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSG-VTRFCLICNYVT----RIIDPLASQCS---KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPH
General information:
TITO was launched using:
RESULT:
Template:
1SXJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106873 for 1172 contacts (-91.2/contact) +
2D Compatibility (PS) -16840 + (NN) -1294 + (LL) 2976
1D Compatibility (HY) -2400 + (ID) 1250
Total energy: -125681.0 ( -107.24 by residue)
QMean score : 0.469
(partial model without unconserved sides chains):
PDB file :
Tito_1SXJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SXJ-query.scw
PDB file :
Tito_Scwrl_1SXJ.pdb
: