Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKRLSIIVIIGIFIITGCDWQRTSKEPSKNAQNQQVIKIGYLPITHSANLMMTKKLLSQYNHPKYKLELVKFNNWPDLMDALN----SGRIDGASTLIELAMKSKQ------KGSNIKAVALGHHEGNVIMGQKGMHL-----------NEFNNGDDYHFGIPHRYSTHYLLLEELRKQLKIKPGH-FSYHEMSPAEMPAALSEHRITGYSVAEPFGALGEKLGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKM---NDRKQSVDIMTH--HFKQSRDVLTQSAAWT---SYGDLTIK-----------------PSGYQEITTLVKQHHLFNPP-----AYDDFVEPSLYKEASRS--------------------------------------- |
| 2G29 Chain:A ((28-412)) | -----------------------------NAPEVTTAKLGFIALTDAAPLIIAKEKGFYAKYGMPDVEVLKQASWGTTRDNLVLGSASGGIDGAHILTPMPYLITMGTVTDGKPTPMYILARLNVNGQGIQLGNNYKDLKVGTDAAPLKEAFAKVTDPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTIVVPPAQMVANVKVNAMESFCVGEPWPLQTVNQGVGYQALTTGQLWKDHPEKAFGMRADWVDQNPKAAKALLMAVMEAQQWCDQAENKEEMCQILSKREWFKVPFEDIIDRSKGIYNFGNGQETFEDQEIMQKYWVDNASYPYKSHDQWFLTENIRWGYLPASTDTKAIVDKVNREDLWREAAQALEVPADQIPSSPSRGIETFFDGITFDPENPQAYLDSLKI |
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General information:
TITO was launched using:
| RESULT:
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Template: 2G29.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -103626 for 2559 contacts (-40.5/contact) +
2D Compatibility (PS) -31063 + (NN) -11685 + (LL) 2424
1D Compatibility (HY) -8800 + (ID) 2950
Total energy: -155700.0 ( -60.84 by residue)
QMean score : 0.498
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