Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNNKVLVTGGTGFVGMRIISRLLEQGYEVQTTIRDLSKADKVIKTMQDNGISTERLMFVEADLSQDEHWDEAMKDCKYVLSVASPVFFGKTDDAEVMAKPAIEGIQRILRAAEHA-GVKRVVMTANFGAVGFSNKDKNSITNESHWTNED-----EPGLSVYEKSKLLAEKAAWDFVENENTIVEFATINPVAIFGPSLDAHVSGSFHLLENLLNG-----SMKRVPQIPLNVVDVRDVAELHILAMTNEQANGKRFIATADGQINLLEIAKLIKEKRPEI--------------AQKVSTKKLPDFILSLGAKFNHQAKEGKLLLDM-NRNVSNERAKTLLGWEPIATQEEAILAAIDSMAKFHLI |
2IOD Chain:D ((8-325)) | ----VCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKV-KHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVFHVATPM---SKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNI-QEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKENN--IDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQF----VHLDDLCNAHIYLFENPKAEG-RYICSSHDCI-ILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKLTD----LGFEFKYS------LEDMFTGAVDTCRAKGLL------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2IOD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -125544 for 2486 contacts (-50.5/contact) +
2D Compatibility (PS) -31079 + (NN) -8209 + (LL) 4192
1D Compatibility (HY) -24400 + (ID) 5300
Total energy: -190340.0 ( -76.56 by residue)
QMean score : 0.564
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