Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYDYDEPLYLISVVAKILGVHPQTSRQYEKEGLIEPS-RTDGKMRLYSQRDMDKIKTILRLTRDMGVNLAGVDIILRLKE--------KLDELDNLNKELQDALHKHSKNTKTPTKNLNTPTNFYELILFKK
1Q06 Chain:A ((1-101))
--------MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQ-VGFNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMRDQLLALANACPGCPIIENLS-
General information:
TITO was launched using:
RESULT:
Template:
1Q06.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31897 for 582 contacts (-54.8/contact) +
2D Compatibility (PS) -9953 + (NN) -4499 + (LL) 356
1D Compatibility (HY) -4000 + (ID) 1100
Total energy: -51093.0 ( -87.79 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_1Q06.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Q06-query.scw
PDB file :
Tito_Scwrl_1Q06.pdb
: