Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEQNKKSLENLDLSDVQNISKDISGTALEELSLKNLDKNLQILKEVGAAEICKATKIASKNIHSILEKRYESLSRVHARGFIQILEHEYKIDLSAWVKEFDKVCVFKEGVGEEQKQETSPEETAKKPLKVELDYSINQANTSLSKKSSKWKPFVIVL----GVVVIILVVVIIQ-----------NSSSLKEEREQERAIKPDTKNNSFNETNPTEEKKLEPTPKLEEKHKEQDKQGKEAIKENPNTIYIIPKRDIWVEVIDLDEKKNSFQKVFKKSY--------------------PLEAKNHRLLLRFGHG----------HLILKNNHQEQDYNDSK-------TRRFLYEPNKGLTLINEAQYKALQQ |
| 3EF0 Chain:A ((4-372)) | -RLESENVKRLRQEKRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYIKFRPGLAQFLQKISELYELHIYTMGT---------KAYAKEVAKIIDPTGKLFQDRVLSRDDSGSLAQKSLRRLFPCDTSMVVVIDDRGDVWDWNPNLIKVVPYEFFVGIGDINSALEEQNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRDHELERLEKVLKDIHAVYYEEENDISSRSGNHKHANVGLIIPKMKQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTESLSQWKRLPESDYLLY-- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3EF0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 92369 for 2177 contacts (42.4/contact) +
2D Compatibility (PS) -31253 + (NN) 6685 + (LL) 1308
1D Compatibility (HY) -5200 + (ID) 1950
Total energy: 61959.0 ( 28.46 by residue)
QMean score : 0.162
|
|
|