Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------MLTLKGKYNEAKVFTDNVDD-NTIGQIITLCNQPFAKDSKIRIMPDTHGGKGCVIGTTMTIQDKIVPNLVGVDIGC----GLYVVKLKPGKLKMD-FDKLDKVIRERVPSGSKTHDKPVDEFDLEGIVAPIHHGWVARSIGTLGGGNHF---IEVNQGSDGIYLVIHSGSRVLGKEIAEYH-QEVAYKRL-DILRKELKL-----DATAA-KKRGNLEMANNLN-GEREQVKLDYDLSYVTGVDLKNYLNDMEIAQKFAARNRYVMAQII-------------------LKAMKWDKAVVSAFDCVHNYIDIEHNM-------LR-KGATSAQLGEQIIVPLNMREGSILATGKG-NADWNYSAPHGAGRMLSRSKAK-----------AQISLESYQAAMKDVWTTSVSKKTIDEAPKA---YKSAKQLLADVEDTM--EIQEIIKPLYNFKA------ |
| 4C8H Chain:A ((25-476)) | FRYMPFSPAGTPFG-FTDRRYLT-----MNEVGYVSTVKNSE---QYSITVSFFDVG----------RFREYHFEDLFGYDLCFLNEKGTLFGQSKTGQIQYRPHDSIHSNWTKIIPLQAGER--------ITSVAATPVRVIVGTSLGYFRSFNQFGVPFAVEKTSPIVALTAQ-NYRVFSVHYSQFHGLSYSLSELKRYYKRECPLPMSLPNINSDMKKDANLDYYNFNPMGIKSLFFSSYGDPCIFGSD-----NTLLLLSKWRSPEESKWLPILDSNMEIWKMSGGKETTDIHVWPLALAYDTLNCILVKGKHIWPEFPLPLPSEMEIRMPVFVKSKLLEENKAILNKE----IQIPVSMAAEEEYLRSKVLSELLTDTLENDGEMYGNENEVLAALNGAYDKALLRLFASACSDQNVEKALSLAHELKQDRALTAAVKISERAELPSLVKKINNIREARYEQQ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4C8H.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -70398 for 2612 contacts (-27.0/contact) +
2D Compatibility (PS) -37343 + (NN) -398 + (LL) 1232
1D Compatibility (HY) -19200 + (ID) 3250
Total energy: -129357.0 ( -49.52 by residue)
QMean score : 0.189
|
|
|