Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MAKPIEEIGEEIGAKVEK-------------------VARKTGNVAGTAAKLSVYSSIWAVKTGVN---KTRAFAQGFKQGWSGK
1OAC Chain:A ((5-88))
AHMVPMDKTLKEFGADVQWDDYAQLFTLIKDGAYVKVKPGAQTAIVNGQPLALQVPVVMKDNKAWVSDTFINDVFQSGLDQTFQVE
General information:
TITO was launched using:
RESULT:
Template:
1OAC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2190 for 331 contacts (6.6/contact) +
2D Compatibility (PS) -6280 + (NN) 2692 + (LL) 0
1D Compatibility (HY) -2000 + (ID) 750
Total energy: -4148.0 ( -12.53 by residue)
QMean score : 0.277
(partial model without unconserved sides chains):
PDB file :
Tito_1OAC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OAC-query.scw
PDB file :
Tito_Scwrl_1OAC.pdb
: