Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LSYEPNTKETMQKIKELTSIPSPTGNTGKIIEKLAKDLDA----SKIPY--RLN-NKGGLIVTLPGKDETKHRMLTAHVDTLGAMVKEIKADGRLLLTLIGGYRFNAIEGEYCTIETSAGDLYSGTILMHQTSVHVYKDAGTAERNDKNMEVRLDVKALDADKVRALGIEVGDFVSFDPRVQIINDEYIKSRHLDDKASVAILLQLINHIHENNLELPHTTHFLISNNEEIGYGGNSNIPAE------TVEYLAVDMGALGDGQTSDEYTVSICAKDGSGPYHLGLRKHLVELAKKNNIDYKVDIYPFYASDASAAINAGNDIIHGLIGPGIDASHA-YERTHRDSLYHTEKLVYAYLFSNILK |
| 3CPX Chain:A ((13-321)) | ---ENLYFQGMQLLKELCSIHAPSGNEEPLKDFILEYIRSNAGSWSYQPVIYADNDLQDCIVLVFG---NPRTAVFAHMDSIGFTVSYNN-----HLHPIGSPSA--KEGYRLVGKDSNG-DIEGVLKI--VDEEW------------------------MLET-DRLIDRGTEVTFKPDFREE-GDFILTPYLDDRLGVWTALELAKTLEH--------GIIAFTCWEEHGGGSVAYLARWIYETFHVKQSLICDITWVTEG-VEAGKGVAISMRDR-MIPRKKYVNRIIELARQTDIPFQLEVEGAGASDGRELQLSPYPWDWCFIGAPEKDAHTPNECVHKKDIESMVGLYKYLMEKL--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3CPX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -126000 for 2630 contacts (-47.9/contact) +
2D Compatibility (PS) -32731 + (NN) -15031 + (LL) 2948
1D Compatibility (HY) -6000 + (ID) 3100
Total energy: -179914.0 ( -68.41 by residue)
QMean score : 0.355
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