Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKKMFVVLALVLSLSLVLMACGGSKDDANSGDSKVLNVWAMGD-EAKSLKELAQKFTKDTGIEVKVQVIPWANAHDKLLTAVASKSGPDVVQMGTTWMPEFVEAGALLDITKDVEKSKNMNSDLFFPGSVKTTQFDGKTYGVPWYAETRVLFYRTDLLKKVGYNEAPKTWDELSDAALKLSKRGKDMYGFAIDPNEQTTGFIFGRQNGSPLFD-KD-----GTPVFNKKPFVDTVTYLDSFIKNGSAPDTDLGLDASQSFGGDGIVPMFMSGPWMVNTLKDTAPDIDGKWATAVLPKKENN--ESSLGGANLSIFKYSDKKDDALKFMD-YMSQPDVQLSWLKDTNSMPARMDAWEDDMLKNDPYYKVFGEQMKTAEPMPLIPQFEEIAQLYGKSWEQIYRGGADVQTQMDTFNDQVETLLKK |
3DM0 Chain:A ((4-389)) | ---------------------------------EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEH--PDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPAAAF-----QDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPN-----PPKTWEEIPALDKELKAKGK--SALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADT-DYSIAEAAFNKGETAMTINGPWAWSNIDTS----AVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEEL-AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAGLV- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DM0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -87215 for 3156 contacts (-27.6/contact) +
2D Compatibility (PS) -38869 + (NN) -20391 + (LL) 3352
1D Compatibility (HY) -11200 + (ID) 4050
Total energy: -158373.0 ( -50.18 by residue)
QMean score : 0.514
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