Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNLLLKCKDKKVKAFTLLEMLVVLIIISVLLLLFVPNLSKQKESVTRTGNAAVVKVVESQAELFELQETGRKASLSTLKSGGYITEKQEKAYLDYYKDSS---NGSQKISS
1CDQ Chain:? ((1-77))
-----LQCYN------------------------CPNPTADCKTAVNCSSDFDACLITKAGLQVYNKCWKFEHCNF------NDVTTRLRENELTYYCCKKDLCNFNEQLEN
General information:
TITO was launched using:
RESULT:
Template:
1CDQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 26521 for 496 contacts (53.5/contact) +
2D Compatibility (PS) -7915 + (NN) 783 + (LL) 4200
1D Compatibility (HY) -2800 + (ID) 450
Total energy: 20339.0 ( 41.01 by residue)
QMean score : 0.133
(partial model without unconserved sides chains):
PDB file :
Tito_1CDQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CDQ-query.scw
PDB file :
Tito_Scwrl_1CDQ.pdb
: