Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKDEMIAKGAKYIQSIYQDPFIQGIIKGRLDHDVICHYLQADNIYLGKFADIYALCLAKSDNLRDKQFFLEQIDFTLNRELADGEGPHQALAAYTNRSYQDIIEKGVWYPSADHYIKHMYFHFYENGIAGALAAMSPCPWIYHQLAKKIIEENQFLNGNPFNNWITFYANDTVEELMENYFRMMDYYAQN------LSKEKQADLVDAFVKSCQMRDVFFKWQ
3MVU Chain:A ((9-222))
-AFSLMRAEAEPAWRAYTHHAFVEGLKAGTLPREAFLHYLQQDYVFLIHFSRAWALAVVKSETHSEMLAAVGTVNALVAEEMQ----LHIGICEASGISQEALFATR-ERAENLAYTRFVLEAGYSGDLLDLLAALAPCVMGYGEIGKRLTAEA---TSTLYGDWIDTYGGDDYQAACKAVGTLLDDALERRLGAEFTSSPRWSRLCQTFHTATELEVGFWQMG
General information:
TITO was launched using:
RESULT:
Template:
3MVU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135457 for 1636 contacts (-82.8/contact) +
2D Compatibility (PS) -22422 + (NN) -6786 + (LL) 512
1D Compatibility (HY) -9200 + (ID) 1950
Total energy: -175303.0 ( -107.15 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_3MVU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MVU-query.scw
PDB file :
Tito_Scwrl_3MVU.pdb
: