Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIWTNLGRFAFIETEHVNLRPVA-YTDREAFWRIA-SKRTNLQFIFPV-QTSKKESDFLLVHSFMKEPLGVWAIEDKVSHKMFGVIRFENIDLSKKTAEIGYF-LKESSWGQGIMTECLKTLSFFAFQEFGMDKLIIVTHKENIASQKVALKAHFKQSRSFKGSDRYTRRIRDYIEFQLTRGDYRYE
3PZJ Chain:A ((31-207))
---------EAAIRGEAVSLQPLDAPRHGAALFRLFAGDDSHWEHLPYGPFEDEDAFITWLALTVAQSDTALYVVCAKDSDQALGFLGYRQMVQAHGAIEIGHVNFSPALRRTRLATEAVFLLLKTAFE-LGYRRCEWRCDSRNAASAAAARRFGFQFEGTLRQAMVVKRRNRDTHVFSMLDGEWDA-
General information:
TITO was launched using:
RESULT:
Template:
3PZJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79551 for 1272 contacts (-62.5/contact) +
2D Compatibility (PS) -18461 + (NN) -3492 + (LL) 776
1D Compatibility (HY) -3600 + (ID) 1600
Total energy: -105928.0 ( -83.28 by residue)
QMean score : 0.334
(partial model without unconserved sides chains):
PDB file :
Tito_3PZJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PZJ-query.scw
PDB file :
Tito_Scwrl_3PZJ.pdb
: