Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVKVQTGGKLYI----AGEYAILYPGQVAIL---KNIPIYMTALATFADNYSLYSDMFNYTASLQPDKQYSLIQETILLMEEWLINFGKNIKPIHLEITGKLERYGLKFGIGSSGSVVVLTIKAMAALYEIEMPSDLLFKLSAYVLLKRGDNGSMGDIACIAYEHLISYSAFDRRAVSKMIETKPLEQVLEAEWGYRITKIQASLEMDFLVGWTMQPSISKEMINIVKSTITQRFLDDTNYQVVQLLSAFKEGDKEAIKRCLEEISLLLFNLHPSIYTDKLQKLKEASKGLD-IVTKSSGSGGGDCGIAISFNKNDNQTLIKRWESAGIELLSKETLS |
| 3PYF Chain:A ((5-282)) | SVTVRVPGKVNLYLAVGDRRE--D-GYHELTTVFHAVSLVDEVTVRNADVLSLELVG-EGADQL-PTDERNLAWQAAELMAEHV----GRAPDVSIMIDKSIPVA---GGMAGGSADAAAVLVAMNSLWELNVPRRDLRMLAARLG---------SDVPFALHGGTALGTGRGE--ELATVL--------------------SRNTFHWVLAFADSGLLTSAVYNELDRLREVGDPPRLGE-PGPVLAALAAGDPDQLAPLLGNEMQA--AAV--SLDPALARALRAGVEAGALAGIVSGSG--PTCAFLCTSASSAIDVGAQLSGAGVCRTVRVATG |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PYF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -139674 for 2219 contacts (-62.9/contact) +
2D Compatibility (PS) -28819 + (NN) -8721 + (LL) 2740
1D Compatibility (HY) 1600 + (ID) 2000
Total energy: -174874.0 ( -78.81 by residue)
QMean score : 0.300
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