Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQLNQRQERIIDIIKQFQPITGELIAEKLGVTRAALRSDLAVLSMLGIIDAKPKVGYFYLGQYHASIGTSHFEKMTVSEIM---GI-PLTVHQKDSVYDVIVHIFMEDAGCAFILDDDDFLCGVVSRKDLLKTSIGGGDLSKMPIGMV-MTRMPHVTTVLENESLFAAADKLVSRKVDSLPVVRHDKQYPEKFKVIGKLSKTILASLFLEIRDY |
2NYC Chain:A ((184-320)) | ------------------------------------------------------------------------LKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGG---LSLSVGEALMRRS---YTCTKNDKLSTIMDNIRKARVHRFFVVDDVG------RLVGVLTLSDILKYILLG--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2NYC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -57588 for 824 contacts (-69.9/contact) +
2D Compatibility (PS) -12954 + (NN) -3600 + (LL) 6484
1D Compatibility (HY) -7200 + (ID) 1300
Total energy: -76158.0 ( -92.42 by residue)
QMean score : 0.379
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