Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MITYQEFLSEKDSLSFEVCTQYFQD-----LVNSLDEVDEYSIIYWKDFITASLIYSQSRGEWLLLSREEKHAKD-DTRTTKHNKFIYTLKIYIAYSKQKGYEFPWFESIKDNRKQLGDLACYIAYIYAVNAR
2KPO Chain:A ((1-110))
MLLYVLIISNDKKLIEEARKMAEKANLELRTVKTEDELKKYLEEFRKESQNIKVLILVSNDEELDKAKELAQKMEIDVRTRKVTSPDEAKRWIKEFSEEGG-------SLEHHHHHH----------------
General information:
TITO was launched using:
RESULT:
Template:
2KPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 10101 for 725 contacts (13.9/contact) +
2D Compatibility (PS) -11094 + (NN) -4216 + (LL) 2036
1D Compatibility (HY) 1200 + (ID) 1050
Total energy: -3023.0 ( -4.17 by residue)
QMean score : 0.086
(partial model without unconserved sides chains):
PDB file :
Tito_2KPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KPO-query.scw
PDB file :
Tito_Scwrl_2KPO.pdb
: