Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKRIILLLAVIIAAAAAGVAFYVAKDKGHEKAADVSVNTES-GDELLVSITDTD---LLTKYYEND--------------KVIHEEKLT-SYPAFALDQKQQVLYYTGNNEQNEMRLFKLDLKSHKKTM-------LYKGAESADSLFLSKDRSTIYF---------RLGKADESNFRI---AAFDLKTKKYK---NLYPAANDQDDTVSSFFYNQKNDSFALLHYSVEEDYKKTDEANEKGIDPEPTTIHFAEGRQNKFNELKSLNQFISDIAVSDD---DKRILFT---SYTQKGTEQTASIQMLNADTKKYESIISNQKSFKLLIDAQPQFSKDGKNIYFLAE--AKGAKKLKDETGR---EAKVRTIYSYSLENKTFKKVWENPNGIINSFFVIN-------------------------
4D7E Chain:A ((1-413))--METLLVVGAGPKALAVAAKSHVLRQLGLSAPRVIAVEAHAVGGNWLASGGWTDGRHRLGTSPEKDIGFPYHSTWARGHNREINEAMMAFSWTSFLVEHGTYAEWIDRGRPSPQHHVWAKYLQWVARKIDLELVLGKVRTIRQGWSVEVAGATTELEADGLMITGPGQSTKALAAHPRVLSIAEFWDLAGKRKLPISSRAAVIGGGETAGSALDELVR--HEMLTISVISPMA---SYFENSLFSDPTKWN-ALSIQERRDVIRRTDRGVFSVRVQESLLGDNRVHHLQGRVTRIVGQGDGVAVTLRN------EMRADQVHNFDLVVDAT-----GGQPLWFLDLFDSESADLLELAVGGPLTQQRIESSIGYDL----------AVTGLGAKLYLPNMAALAQGPGFPNLSCLGELSDRVLR


General information:
TITO was launched using:
RESULT:

Template: 4D7E.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1385 -77155 -55.71 -241.86
target 2D structure prediction score : 0.44
Monomeric hydrophicity matching model chain A : 0.64

3D Compatibility (PKB) : -55.71
2D Compatibility (Sec. Struct. Predict.) : 0.44
1D Compatibility (Hydrophobicity) : 0.64
QMean score : 0.094

(partial model without unconserved sides chains):
PDB file : Tito_4D7E.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4D7E-query.scw
PDB file : Tito_Scwrl_4D7E.pdb: